                                                                        Gene putatively regulated by attenuation in C_burnetii

                                                                        Characteristics of the secondary structures
Terminator:    Distance to gene:195 nt.     Distance to run of Ts=0 nt.   Size=26 nt.     Delta G= -9.50 kcal/mol
Antiterminator: Size=22 nt.     Delta G= -5.10 kcal/mol
Anti-antiterminator:   Size=20 nt.     Delta G= -3.70 kcal/mol

                                                                        Nomenclature/Definitions
Bases shared by the antitermination and termination structures are shown in red
Bases shared by the anti-antitermination and antitermination structures are shown in green
The sequences of the anti-antiterminator, antiterminator and terminator structures are underlined
Coding regions are in CAPS, non-coding regions are in lower case

ATCTAGATCTAGCCTTAGCCTTCTTGGGCACCTTAGCTCCCTTTTTACGAGCCTTCGA
CAAGCCGATAGCTATCGCTTGTTTTCGGCTTTTTACTTTTTTCTTTTTAGGACCACTG
TGAGCCTTTCCCTTTTTATAGCGCCGCATTTCTTTTTGCACTTCCTTTTGTGCGGCTT
TACTGTATTTTCTGGCCATgctcattctccatatttttaattgggttgctctaaatatagtctaattttttaaaaaagcagaatag
tctataatccttgtatgataagttttcaaggaagaagctcATG

    CBU1933 Gene: CBU1933     GI: 29655218     BI number: CBU1933     GOG: COG1273     Description: conserved hypothetical protei                      CG                     T  C AT        AA       A  T c  G      C  G      T  T tA       A  C       CG cG        GC        GT gC        CG        AT a  |       TA       T  T a  |      T  T       AT gC       C  A       GC aT        CG        CG aT        GC        CG gC        AT        GC                         TTTTTACTTTTTTCTTTTTAGGACCACTGTGAGCCTTTCCCTTTTTATAGCGCCGCATTTCTTTTTGCACTTCCTTTTGTGCGGCTTTACTGTATTTTCTGGCCATgctcattctccatatttttaattgggttgctctaaatatagtctaattttttaaaaaagcagaatagtctataatccttgtatgataagttttcaaggaagaagctcATG                                                                         Orthologous genes that have a predicted attenuator, grouped in COG families [S] COG1273 Uncharacterized conserved protein ... can be seen here     ..................................................................................................................