Gene putatively regulated by attenuation in C_burnetii
Characteristics of the secondary structures
Terminator: Distance from promoter:155 nt. Distance to gene:30 nt. Distance to run of Ts=0 nt. Size=25 nt. Delta G= -7.30 kcal/mol
Antiterminator: Distance from promoter:129 nt. Size=35 nt. Delta G= -3.00 kcal/mol
Nomenclature/Definitions
The most likely promoter is: ttgaca-tagtct. It has a score value of 66.27 and is shown in blue
Bases shared by the antitermination and termination structures are shown in red
The sequences of the antiterminator and terminator structures are underlined
Coding regions are in CAPS, non-coding regions are in lower case
ttgacaaatcggaactttgtgttagtctaacaaaactcacaacctcgaagaaaaaaaggagtgtgctaatggataagcgttaggtatccgttctttctta
tttattattatttctttattttttctttgtcttgacccaataattttcgcctcctctcctcttccctgcgtatcatttacaacagaaacgggtgtttggt
caccctcttttattttaaaaaataattgcggtgaatccttagaaATG
CBU2044
Gene: CBU2044 GI: 29655323 BI number: CBU2044 GOG: ------- Description: hypothetical protei
a
c t
t t
at
ta
gc tg
| a t g
c a t t
gc gc
ta ta
cg gc
c a gc
c | gc
ta c |
ta a |
c c a |
tg at
cg gc
cg at
tttattttaaaaaataattgcggtgaatccttagaaATG
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