Gene putatively regulated by attenuation in C_burnetii
Characteristics of the secondary structures
Terminator: Distance to gene:165 nt. Distance to run of Ts=3 nt. Size=19 nt. Delta G= -6.70 kcal/mol
Antiterminator: Size=49 nt. Delta G= -8.20 kcal/mol
Anti-antiterminator: Size=50 nt. Delta G= -6.50 kcal/mol
Nomenclature/Definitions
Bases shared by the antitermination and termination structures are shown in red
Bases shared by the anti-antitermination and antitermination structures are shown in green
The sequences of the anti-antiterminator, antiterminator and terminator
structures are underlined
Coding regions are in CAPS, non-coding regions are in lower case
ATACCGCGATGGTTGTATAAACGGTTAGAGTCTTATAAAAATGATAAAGCTTCATTGA
AGGCTTACGGCGTTGAAGTGGTAACGAAACTTTGTGAAGATTTAATCGCTTACGGGGT
CCCGGGGCTTCATTTTTACACTTTAAATCAATGTGAACCTACCCAAACCATTATTGAA
AACCTTCAATCCATCACCTCTTTCCGTGAACAAGCGGTTGTTGCCTGAataaaaaattcacgat
ataaattttcccgctctaggttgtttttttattagtcttaatttccaaaaccagcgcactgcGTG
CBU2046
Gene: CBU2046 GI: 29655325 BI number: CBU2046 GOG: ------- Description: hypothetical protei
TG
T A
G A
CG GT
GT T G
G G TA
CG TA
AT CG
TA A A
TA AT
C C AT
G | GT
G | C A
A | A |
A | A |
G | TA
T | GT
T | GC
A | TG
CG GC GT
TA AT G C
TA AT GC
C A | A GC
GC GC CG
AT TG A |
AT TG TG
AT G G TG
TG CG CG
AT GT GC
TTCATTTTTACACTTTAAATCAATGTGAACCTACCCAAACCATTATTGAAAACCTTCAATCCATCACCTCTTTCCGTGAACAAGCGGTTGTTGCCTGAataaaaaattcacgatataaattttcccgctctaggttgtttttttattagtcttaatttccaaaaccagcgcactgcGTG
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