Gene putatively regulated by attenuation in C_burnetii
Characteristics of the secondary structures
Terminator: Distance to gene:171 nt. Distance to run of Ts=0 nt. Size=25 nt. Delta G=-13.00 kcal/mol
Antiterminator: Size=46 nt. Delta G=-11.30 kcal/mol
Anti-antiterminator: Size=41 nt. Delta G= -5.91 kcal/mol
Nomenclature/Definitions
Bases shared by the antitermination and termination structures are shown in red
Bases shared by the anti-antitermination and antitermination structures are shown in green
The sequences of the anti-antiterminator, antiterminator and terminator
structures are underlined
Coding regions are in CAPS, non-coding regions are in lower case
CAGTGGCTCGATTTAAAGCCGGCAAAAAACTTAAAGACGCCGTTAATAAAGAAAAAGT
GTAGacTTGATTAAGTACGGTAGATCAGCTATCTTCTGTGCCCCAGGGTCGATGATTC
CGGGGCTTTTTTTTGGTACTTTGGTGTTGAGAAATTTTGGGTGCTTAGCTCAGTTGGG
TGAGGCGGAAAAAGAGCAAAGCACAGCTTTGCTCCCGCCGAACGCCCGCCAGGAAGGC
GGGCAGGGTGCGTTTCCAAAAATAGTATAGgcgaggacaggaagtccggtggtgtttgagaaaattttGGG
_v42 --- _v41
Gene: _v42 GI: tRNA-Val-2 BI number: tRNA-Val-2 GOG: ------- Description: tRNA-Val
Gene: _v41 GI: tRNA-Asp-1 BI number: tRNA-Asp-1 GOG: ------- Description: tRNA-As
G
A C
C T
TA TA
G G AT
Ta GC
Gc AT
AT T T
AT GC
A G GT
A A CG
A T AT
G T TG A
A A GC G T
A A | C CG
A G | C TA
T T | C GT
A | A A GT
A | A G GC
T | TG A C
TA TG CG
GC AT CG
CG GC CG
CG TG CG
GT TA GC
TTTTTTTTGGTACTTTGGTGTTGAGAAATTTTGGGTGCTTAGCTCAGTTGGGTGAGGCGGAAAAAGAGCAAAGCACAGCTTTGCTCCCGCCGAACGCCCGCCAGGAAGGCGGGCAGGGTGCGTTTCCAAAAATAGTATAGgcgaggacaggaagtccggtggtgtttgagaaaattttGGG
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