                                                                        Gene putatively regulated by attenuation in D_radiodurans_1

                                                                        Characteristics of the secondary structures
Terminator:    Distance to gene:71 nt.     Distance to run of Ts=0 nt.   Size=27 nt.     Delta G=-13.60 kcal/mol
Antiterminator: Size=47 nt.     Delta G=-10.20 kcal/mol
Anti-antiterminator:   Size=21 nt.     Delta G= -3.70 kcal/mol

                                                                        Nomenclature/Definitions
Bases shared by the antitermination and termination structures are shown in red
Bases shared by the anti-antitermination and antitermination structures are shown in green
The sequences of the anti-antiterminator, antiterminator and terminator structures are underlined
Coding regions are in CAPS, non-coding regions are in lower case

GGGCGTGGCTGATGAGCACGGCGCTCGGCTGCCACGACTGCACTTCGCCGAGGGTCAC
CGGGCAGCGCGGGTTGCCTTCGAGAAAGGGTTCGATGAGCAGACGGTGCGTCCCGTCA
TCGAGAAAGAAAGTGCTGTGGCCGAGAGAACGGATCTTGAGCATGAGGTTGCCTCCTG
GAACTCCTGAGTATGAATGAGGAGGGGCGACAGCGTGGGGATGTTGTGCCCTTTTGTC
CCCTCCCCCTGATCTCAGCCGCTTCATggcgcgggcccctatagtagaccggccccacctggcggcccTTG

    DR0007 --- DR0008 Gene: DR0007     GI: 15805049     BI number: DR0007     GOG: COG1624     Description: conserved hypothetical protein Gene: DR0008     GI: 15805050     BI number: DR0008     GOG: -------     Description: hypothetical protei             T           A  G           T  A           G  A           A  T           G  G            TA            CG            CG            TA            CG           |  G           |  G           |  G       GG           A  C      G  G           A  G       TA CC       G  A       GT T  T       GC        CG CG        TA        GT CG        CG        AT |  A      |  C       CG G  A      |  G       AT T  C      |  T      G  | T  T       CG        CG GC        TG        GC GC        CG        GC AT        CG        GC                         TTTTGTCCCCTCCCCCTGATCTCAGCCGCTTCATggcgcgggcccctatagtagaccggccccacctggcggcccTTG                                                                         Orthologous genes that have a predicted attenuator, grouped in COG families [S] COG1624 Uncharacterized conserved protein ... can be seen here     ..................................................................................................................