Gene putatively regulated by attenuation in D_radiodurans_1
Characteristics of the secondary structures
Terminator: Distance to gene:134 nt. Distance to run of Ts=0 nt. Size=32 nt. Delta G=-13.00 kcal/mol
Antiterminator: Size=78 nt. Delta G=-22.40 kcal/mol
Anti-antiterminator: Size=55 nt. Delta G=-14.70 kcal/mol
Nomenclature/Definitions
Bases shared by the antitermination and termination structures are shown in red
Bases shared by the anti-antitermination and antitermination structures are shown in green
The sequences of the anti-antiterminator, antiterminator and terminator
structures are underlined
Coding regions are in CAPS, non-coding regions are in lower case
TCGCGGGTTCAAATCCCGTCCGGACCGccaaagtctccccctggggagcacGGCTAGGTAGCTCAGCT
GGTAGAGCAAACGACTGAAAATCGTTGGGTCGCCGGTTCAAGTCCGGCCCTGGCCAcc
aaacgagaactcctctgtccctggcaggggattttttgttttccccatgtatgtcagcttttcagaggcccccgtagagttggggacatggacagcgctc
tcccagaatttccaacttcatccagacagcttgccgaccctacccaagtagagcagcgccgctcctagctcactTTG
DR0022
Gene: DR0022 GI: 15805063 BI number: DR0022 GOG: ------- Description: conserved hypothetical protei
A
C A
T G
T T
GC
GC
CG
CG
GC
| C
| C
| T
CG
TG
GC
GC
| A
| c
| c
CG G a
A A Ta
A C Ta
AT Gc
CG Cg
G A Ta
A A | g
G A A a
A | A a
TA A c
GT At
GC Gc
T | T | c
CG C | c t
GT A | c g
AT G | tg
CG C | gc
TG A | ta
CG A | cg
GT A | tg
A C C | cg
T G Gc cg
GC At ta
GC Gc c |
A | At at
TG Tg at
CG | t gt
GT Gc at
GT Gc gt
tgttttccccatgtatgtcagcttttcagaggcccccgtagagttggggacatggacagcgctctcccagaatttccaacttcatccagacagcttgccgaccctacccaagtagagcagcgccgctcctagctcactTTG
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