                                                                        Gene putatively regulated by attenuation in D_radiodurans_1

                                                                        Characteristics of the secondary structures
Terminator:    Distance to gene:44 nt.     Distance to run of Ts=0 nt.   Size=25 nt.     Delta G=-16.20 kcal/mol
Antiterminator: Size=34 nt.     Delta G= -5.60 kcal/mol

                                                                        Nomenclature/Definitions
Bases shared by the antitermination and termination structures are shown in red
The sequences of the antiterminator and terminator structures are underlined
Coding regions are in CAPS, non-coding regions are in lower case

TCGACGCCGTCATCACCGTGACCGGCGGCGGCCCCAGCGGCCAGGCCGACGCGATCAA
GCTCGGCATTGCCCGCGCCCTGCTCAAGGTCAACCCTGACTTCCGCGCCCAGATGAAG
CCCAAGGGCCTGCTGACCCGCGACCCCCGCGAAGTGGAACGCAAGAAGTACGGCCTCA
AGAAGGCCCGCCGCGCTCCCCAGTTCAGCAAGCGCTAAagcaccctgctcaagagccccttcccccgcggag
ggggttttttgtggttggaggacgggaaaggcgggacgccttaaactgtcttccGTG

    DR0176 Gene: DR0176     GI: 15805212     BI number: DR0176     GOG: COG2027     Description: D-alanyl-D-alanine carboxypeptidase, putativ TA C  A G  a Cg Gc |  a |  c |  c        c A  c      c  g At       c  c Cg        cg Gc        cg At        ta |  c       tg |  a       cg |  a       cg Cg        cg Ta        cg Tg        gt Gc        at             ttttgtggttggaggacgggaaaggcgggacgccttaaactgtcttccGTG                                                                         Orthologous genes that have a predicted attenuator, grouped in COG families [M] COG2027 D-alanyl-D-alanine carboxypeptidase (penicillin-binding protein 4) ... can be seen here     ..................................................................................................................