                                                                        Gene putatively regulated by attenuation in D_radiodurans_1

                                                                        Characteristics of the secondary structures
Terminator:    Distance to gene:63 nt.     Distance to run of Ts=0 nt.   Size=21 nt.     Delta G= -8.30 kcal/mol
Antiterminator: Size=78 nt.     Delta G=-18.05 kcal/mol

                                                                        Nomenclature/Definitions
Bases shared by the antitermination and termination structures are shown in red
The sequences of the antiterminator and terminator structures are underlined
Coding regions are in CAPS, non-coding regions are in lower case

GGCTCACCGAAGATGTATTCCAGCAGCTACTTGGATTCACAACTGGCAAGGTTGGCAG
CGCAGGTGCAGGCGAATTCTGGCGACGTATGGGTCATCTTCGACAACACGGCGGTGGG
GGCAGCGGTAGAAAACGGGCTGATTTTACGGAACTTGTTGAGTTCAGCACAGTCGGAA
AGGCAAACCTCTTGCCAGCCTGACCCCAAATGAacaaatccccgcccgcaggcaagggatttttcgtttagttagc
agtcgaactatcagcacgtgcgggcagcctaccctgtttagggaccacaaGTG

    DR0540 --- DR0539 --- DR0538 --- DR0537 --- DR0536 Gene: DR0540     GI: 15805567     BI number: DR0540     GOG: -------     Description: hypothetical protein Gene: DR0539     GI: 15805566     BI number: DR0539     GOG: -------     Description: hypothetical protein Gene: DR0538     GI: 15805565     BI number: DR0538     GOG: NOG15815     Description: hypothetical protein Gene: DR0537     GI: 15805564     BI number: DR0537     GOG: NOG26829     Description: hypothetical protein Gene: DR0536     GI: 15805563     BI number: DR0536     GOG: -------     Description: hypothetical protei   C C  T A  C AT AT CG GC GC A  A A  G A  C GC GT CG TA GC |  C A  C C  C A  A C  A G  A AT CG TA Ta Gc A  a G  a T  a       gc T  t      c  a G  c       cg T  c       cg T  c       gc C  c      |  a A  g      c  a A  c       cg Gc        cg Gc        cg Cg        ta             tttttcgtttagttagcagtcgaactatcagcacgtgcgggcagcctaccctgtttagggaccacaaGTG     ..................................................................................................................