Gene putatively regulated by attenuation in D_radiodurans_1
Characteristics of the secondary structures
Terminator: Distance to gene:91 nt. Distance to run of Ts=0 nt. Size=28 nt. Delta G=-20.80 kcal/mol
Antiterminator: Size=52 nt. Delta G=-19.00 kcal/mol
Anti-antiterminator: Size=52 nt. Delta G=-15.80 kcal/mol
Nomenclature/Definitions
Bases shared by the antitermination and termination structures are shown in red
Bases shared by the anti-antitermination and antitermination structures are shown in green
The sequences of the anti-antiterminator, antiterminator and terminator
structures are underlined
Coding regions are in CAPS, non-coding regions are in lower case
CGAACTCATTGCCGAGGGCACCGGCGCCACCCGCGAAAGCGTGAGCAAACTCATCGGC
GAAATGCGCGACGACGGGCTGCTGCTCCCCGCCTACCGCTGCCTGACGCTGACCGACG
AGGCCGAGTTGCGGCGGCTGAGCGGCCTGACCGAGCCGAGCTGAgagaagcggggaagacaggcgcc
agggcgaaagctgcggcgcctttttcttgtcattccctccacttgggtagttggctggaactatgcccgacaggagacgccctgcggctgtgagagccag
tcccgcaccttccagacGTG
DR0835
Gene: DR0835 GI: 15805861 BI number: DR0835 GOG: ------- Description: hypothetical protei
G
T A
CG
GC
G G ga
CG A g
GC G a
GC Ta
C | Cg
GT Gc
TG A g
TA G g
GC Cg
A | Cg
GC G a
CG A a
| A G g
CG C a
GC C | aa
GC A | g a
A G Gc cg
G | Ta gc
C | Cg gt
A | Cg g g
G | G | a c
C | Gc cg
C | Cg cg
A | Gc gc
G | A | cg
TA Gc gc
CG Ta gc
GC Cg at
ttttcttgtcattccctccacttgggtagttggctggaactatgcccgacaggagacgccctgcggctgtgagagccagtcccgcaccttccagacGTG
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