Gene putatively regulated by attenuation in D_radiodurans_2
Characteristics of the secondary structures
Terminator: Distance to gene:124 nt. Distance to run of Ts=0 nt. Size=22 nt. Delta G=-12.80 kcal/mol
Antiterminator: Size=44 nt. Delta G=-15.50 kcal/mol
Anti-antiterminator: Size=34 nt. Delta G= -9.30 kcal/mol
Nomenclature/Definitions
Bases shared by the antitermination and termination structures are shown in red
Bases shared by the anti-antitermination and antitermination structures are shown in green
The sequences of the anti-antiterminator, antiterminator and terminator
structures are underlined
Coding regions are in CAPS, non-coding regions are in lower case
gtgcagatgctcgccgatgaggtgcggacccatcagaaggccggcgtgatggtcacccacgacgagcgcgtgctcgacctgtgtgaccgggtggtgacta
tggtggacgggcaactgcgcggctgacccatagagcgagttcgcctgtgaggcacgtcctgagtggcgtgcctttttcgtttgctggcatgagcgggaga
aaaggaccggctgagaacagagtgtcggcccctttacgaatgccctggcatatgccagattgggctccttacacgttcactcaaaattcaaggagaccac
ATG
DRA0281 --- DRA0282
Gene: DRA0281 GI: 15807942 BI number: DRA0281 GOG: ------- Description: hypothetical protein
Gene: DRA0282 GI: 15807943 BI number: DRA0282 GOG: ------- Description: hypothetical protei
gt
a t
gc
cg
gc
a |
ac gc
a t at
cg tg
gc at
g g cg
gc | a
cg cg
a g cg ga
gc a | t g
gt gc c t
| g ta cg
| a | c tg
t c cg gc
gc gt cg
gc gc at
ta c c cg
at gt gc
ta cg gc
tttttcgtttgctggcatgagcgggagaaaaggaccggctgagaacagagtgtcggcccctttacgaatgccctggcatatgccagattgggctccttacacgttcactcaaaattcaaggagaccacATG
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