Gene putatively regulated by attenuation in E_coli_K12

                                                                        Characteristics of the secondary structures
Terminator:    Distance to gene:177 nt.     Distance to run of Ts=0 nt.   Size=21 nt.     Delta G= -6.10 kcal/mol
Antiterminator: Size=42 nt.     Delta G=-11.60 kcal/mol
Anti-antiterminator:   Size=30 nt.     Delta G= -8.60 kcal/mol

                                                                        Nomenclature/Definitions
Bases shared by the antitermination and termination structures are shown in red
Bases shared by the anti-antitermination and antitermination structures are shown in green
The sequences of the anti-antiterminator, antiterminator and terminator structures are underlined
Coding regions are in CAPS, non-coding regions are in lower case

CCCGGCACCATGTGGAAGCTGCCAGTCACTTCCTAACACGCAATTCTTATCGATCGTT
CCTTGTGGAGCGTTAAGCATCAACAAACGGCTAAGGGCATCCATatcagactcctgagtggtttttg
attacaaacaccaacaatcttagtaaataactaatctaataccatcaaatagttaatcatgatttttgttttgtgattctgattaagaaaaagaaaatat
cagacgataagacaaaatatcaagcgttgtgaagaaatgttatttgctcttttgcgtctatagtcatgatgtcaaATG

    ykgC


Gene: ykgC     GI: 16128289     BI number: b0304     GOG: COG1249     Description: putative oxidoreductas


            C
          A  A
          A  A
          C  A
          T  C
 TG       A  G
T  T       CG
 CG        GC
 CG        AT
 TA       A  A
 TG        TA
 GC        TG        ct
 CG       G  G      a  c
T  T       CG        gc
A  |       GC        at
G  |      |  A       cg
C  |       AT        ta
T  |       GC       a  |
 AT        GC        Tg
 TA        TA        At
 TA        GT        Cg
 CG        Ta        Cg
                        tttttgattacaaacaccaacaatcttagtaaataactaatctaataccatcaaatagttaatcatgatttttgttttgtgattctgattaagaaaaagaaaatatcagacgataagacaaaatatcaagcgttgtgaagaaatgttatttgctcttttgcgtctatagtcatgatgtcaaATG


                                                                        Orthologous genes that have a predicted attenuator, grouped in COG families

[C] COG1249 Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes ... can be seen here

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