                                                                        Gene putatively regulated by attenuation in L_innocua

This operon is putativelly rgulated by Guanine_G-box

                                                                        Characteristics of the secondary structures
Terminator:    Distance from promoter:135 nt.    Distance to gene:17 nt.     Distance to run of Ts=0 nt.   Size=28 nt.     Delta G=-17.30 kcal/mol
Antiterminator:    Distance from promoter:89 nt. Size=56 nt.     Delta G=-18.30 kcal/mol

                                                                        Nomenclature/Definitions
The most likely promoter is: ttgacc-tataat. It has a score value of 86.35 and is shown in blue
Bases shared by the antitermination and termination structures are shown in red
The sequences of the antiterminator and terminator structures are underlined
Coding regions are in CAPS, non-coding regions are in lower case

ttgaccctgctcctttagaaagctataataaacaacataacttaaaaccgaaatacttatataatagttgcgattgggcgacgagtttctacctggttac
cgtaaataaccggactatgagtagtttgtataaagaagtcactccgaaaattggtggcttctatactgcttctctaaatttagagaagcagtttttttat
tttgaaaggagaatatctTTG

    lin1998 --- lin1997 Gene: lin1998     GI: 16801064     BI number: lin1998     GOG: COG0503     Description: - Gene: lin1997     GI: 16801063     BI number: lin1997     GOG: COG2233     Description:   a a  a g  a c  t c  t tg cg at cg tg gc at at gc at a  | a  |       at ta       a  t at        at ta        ta gc        cg t  t       ta t  |       cg tg        ta gc        ta at        cg t  t       gc gc        ta at        cg gc        at             ttttttattttgaaaggagaatatctTTG                                                                         Orthologous genes that have a predicted attenuator, grouped in COG families [F] COG0503 Adenine/guanine phosphoribosyltransferases and related PRPP-binding proteins ... can be seen here [F] COG2233 Xanthine/uracil permeases ... can be seen here                                                                         Genes that have a predicted attenuator with a riboswitch: Guanine_G-box sequence ... can be seen here     ..................................................................................................................                                                                         Gene putatively regulated by attenuation in L_innocua This operon is putativelly rgulated by Guanine_G-box                                                                         Characteristics of the secondary structures Terminator:    Distance from promoter:137 nt.    Distance to gene:24 nt.     Distance to run of Ts=0 nt.   Size=24 nt.     Delta G=-13.00 kcal/mol Antiterminator:    Distance from promoter:101 nt. Size=56 nt.     Delta G=-18.30 kcal/mol                                                                         Nomenclature/Definitions The most likely promoter is: ttgacc-tataat. It has a score value of 86.35 and is shown in blue Bases shared by the antitermination and termination structures are shown in red The sequences of the antiterminator and terminator structures are underlined Coding regions are in CAPS, non-coding regions are in lower case ttgaccctgctcctttagaaagctataataaacaacataacttaaaaccgaaatacttatataatagttgcgattgggcgacgagtttctacctggttac cgtaaataaccggactatgagtagtttgtataaagaagtcactccgaaaattggtggcttctatactgcttctctaaatttagagaagcagtttttttat tttgaaaggagaatatctTTG     lin1998 --- lin1997 Gene: lin1998     GI: 16801064     BI number: lin1998     GOG: COG0503     Description: - Gene: lin1997     GI: 16801063     BI number: lin1997     GOG: COG2233     Description:   t t  c c  t g  a g  t ta gc gt tg tc at at ac at gc c  | c  | tt ca        at aa       a  t ca        at t  t       ta g  |       cg at        ta a        cg g        ta a         ta a        cg a        gc t        ta             gtttttttattttgaaaggagaatatctTTG                                                                         Orthologous genes that have a predicted attenuator, grouped in COG families [F] COG0503 Adenine/guanine phosphoribosyltransferases and related PRPP-binding proteins ... can be seen here [F] COG2233 Xanthine/uracil permeases ... can be seen here                                                                         Genes that have a predicted attenuator with a riboswitch: Guanine_G-box sequence ... can be seen here     ..................................................................................................................