Gene putatively regulated by attenuation in L_monocytogenes_4b_F2365

                                                                        Characteristics of the secondary structures
Terminator:    Distance to gene:165 nt.     Distance to run of Ts=0 nt.   Size=24 nt.     Delta G=-16.20 kcal/mol

                                                                        Nomenclature/Definitions

ATCGGATAGCCCAGAAAGTGCGAAACGGGAAATTCAGTTGTTTTTTGCACCGCAGGAA
ATTTTAAGTTATCAAAAGGCAATCGACACTTGGATTTAAcatagtatagagtttagggaaacctaggctct
ttttttatagagaaattaccatttcatgcggttttttggtaagatgaaagaatgaaacgaaagtattgttttctcgcgtggcatatgttaagatattaca
catatactttaaagcgctaaaatataaacgctagaaaatctagctgaaatagaaaaaggagagatgagcagATG

    aroC --- aroB --- aroH --- hisC --- tyrA --- aroA


Gene: aroC     GI: 46908161     BI number: LMOf2365_1957     GOG: COG0082     Description: chorismate synthase
Gene: aroB     GI: 46908160     BI number: LMOf2365_1956     GOG: COG0337     Description: 3-dehydroquinate synthase
Gene: aroH     GI: 46908159     BI number: LMOf2365_1955     GOG: COG4401     Description: chorismate mutase
Gene: hisC     GI: 46908158     BI number: LMOf2365_1954     GOG: COG0079     Description: histidinol-phosphate aminotransferase
Gene: tyrA     GI: 46908157     BI number: LMOf2365_1953     GOG: COG0287     Description: prephenate dehydrogenase
Gene: aroA     GI: 46908156     BI number: LMOf2365_1952     GOG: COG0128     Description: 3-phosphoshikimate 1-carboxyvinyltransferas


          aa
         g  a
          gc
          gc
          at
          ta
          tg
          tg
          gc
          at
          gc
          at
            ttttttatagagaaattaccatttcatgcggttttttggtaagatgaaagaatgaaacgaaagtattgttttctcgcgtggcatatgttaagatattacacatatactttaaagcgctaaaatataaacgctagaaaatctagctgaaatagaaaaaggagagatgagcagATG


                                                                        Orthologous genes that have a predicted attenuator, grouped in COG families

[E] COG0082 Chorismate synthase ... can be seen here
[E] COG0337 3-dehydroquinate synthetase ... can be seen here
[E] COG4401 Chorismate mutase ... can be seen here
[E] COG0079 Histidinol-phosphate/aromatic aminotransferase and cobyric acid decarboxylase ... can be seen here
[E] COG0287 Prephenate dehydrogenase ... can be seen here
[E] COG0128 5-enolpyruvylshikimate-3-phosphate synthase ... can be seen here

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