                                                                        Gene putatively regulated by attenuation in S_agalactiae_NEM316

This operon is putativelly rgulated by Glycine_cleavage

                                                                        Characteristics of the secondary structures
Terminator:    Distance to gene:103 nt.     Distance to run of Ts=3 nt.   Size=27 nt.     Delta G=-11.50 kcal/mol
Antiterminator: Size=21 nt.     Delta G= -4.60 kcal/mol
Anti-antiterminator:   Size=49 nt.     Delta G= -3.00 kcal/mol

                                                                        Nomenclature/Definitions
Bases shared by the antitermination and termination structures are shown in red
Bases shared by the anti-antitermination and antitermination structures are shown in green
The sequences of the anti-antiterminator, antiterminator and terminator structures are underlined
Coding regions are in CAPS, non-coding regions are in lower case

gactgattgacagacggacttctggagagacctataagtagcaacatctttgtattgacaccaagatgtgctctaggcgccgaaggggcaagaagagtaa
aacaactcctccaatctctcaggcaaaaggacagaagctaaaagccaatattaataatgagtagtaagcttattaagtttactactacctttatttgtgc
gctttttagctagcatctttcagaagttatctcttttagagataacttttttcgtttcattacagaatccataggtatgtcatgtatcaaaggagaacat
ATG

    gbs1212 Gene: gbs1212     GI: 25011261     BI number: gbs1212     GOG: COG1115     Description: Unknow ag c  a a  a g  g gc at |  a a  a a  a a  a cg gc gc |  a |  a |  t |  a |  t                  t |  t                a  t |  a                 ta |  a        t        ta |  t      g  a       cg |  a      a  a       gt |  a       tg        at at        gc        at cg        at        ta ta        gt        gc cg        ta        at |  t       at        ta ta        at        gc cg        ta        at                         acctttatttgtgcgctttttagctagcatctttcagaagttatctcttttagagataacttttttcgtttcattacagaatccataggtatgtcatgtatcaaaggagaacatATG                                                                         Orthologous genes that have a predicted attenuator, grouped in COG families [E] COG1115 Na+/alanine symporter ... can be seen here                                                                         Genes that have a predicted attenuator with a riboswitch: Glycine_cleavage sequence ... can be seen here     ..................................................................................................................