Khavari Lab: Gene Expression Data

1. Robbins et al. In vivo Restoration of Laminin 5 b3 Expression and Function in Junctional Epidermolysis Bullosa

The data below represents gene expression profiling data obtained with cDNA microarrays and is supplemental to data in the manuscript titled above. Cells from 3 unrelated JEB patients were transduced with retroviral vectors encoding GFP (JEB[-]), LAMB3 (JEB[+]), or grown on ECM containing laminin 5 (JEB[-] ECM). Normal human keratinocytes were cultured in parallel and used as a reference standard. 21-28 days post-transduction, total cellular RNA was extracted from each cell population and used to generate cDNA probes for microarray hybridization. Labeled probes were incubated with one of three Atlas array membranes (Clontech): Human Cancer 1.2, Human 1.2 or Human 1.2 II and the resultant hybridization signals were detected using a Molecular Dynamics Storm 820 phosphorimager. Values are expressed as a percentage of the average value measured for the same gene in triplicate normal controls (Normal is arbitrarily assigned a value of 100%). The following list is compiled from all of our experiments and represents every gene for which at least one clear hybridization signal was detected. These gene expression data are presented for comparison only and due to experimental variability, may contain artifacts or spurious values for samples defined by a single hybridization signal. A less comprehensive, but more accurate reflection of the alterations in gene expression under the proscribed conditions can be found in Table 3 (Robbins et al., submitted). The data presented in Table 3 are exclusively comprised of values for which 2-6 experimental replicates were averaged and therefore, are less influenced by the experimental error that can characterize this technique.

Gene Name GenBank Accession #(s) JEB[-] JEB[+] JEB[-] ECM
14-3-3 protein beta/alpha; protein kinase C inhibitor protein-1 (KCIP-1); protein 1054 X57346 155 130 167
14-3-3 protein sigma; stratifin; epithelial cell marker protein 1 P31947 88 62 99
14-3-3 protein tau; 14-3-3 protein theta; 14-3-3 protein T-cell; HS1 protein X56468 94 56 79
14-3-3 PROTEIN ZETA/DELTA (PROTEIN KINASE C INHIBITOR PROTEIN-1) (KCIP-1) (FACTOR ACTIVATING EXOENZYME S) (FAS). M86400 134 83 147
40S ribosomal protein S16 M60854 86 150 139
80-kDa nuclear cap-binding protein D32002 88 297 151
acidic fibroblast growth factor (AFGF) + heparin-binding growth factor 1 precursor (HBGF-1) + beta-endothelial cell growth factor (ECGF-beta) P05230; P07502 84 110 75
acute myeloid leukemia 1 protein; oncogene aml-1 D43967 106 273 118
ADP/ATP carrier protein J02683 98 121 135
AF-17 protein U07932 132 167 144
alcohol dehydrogenase 6 + aldehyde dehydrogenase 1 (ALDH1) K03000 103 192 122
aldehyde dehydrogenase (ALDH6) U07919 130 99 164
alpha-1-acid glycoprotein 1 precursor (AGP1); orosomucoid 1 (OMD1) X02544 186 135 114
alpha-2-antiplasmin D00174 134 82 146
alpha-actinin 1 cytoskeletal isoform; F-actin cross linking protein X15804 122 86 126
alpha-catenin related protein (CAPR); alpha 2 catenin (CTNNA2); alpha N-catenin P26232 77 84 58
alpha-galactosidase A precursor; melibiase; alpha-D-galactoside galactohydrolase X05790 176 95 153
alpha1 catenin (CTNNA1); cadherin-associated protein; alpha E-catenin P35221 100 97 90
Alzheimer's disease amyloid A4 protein precursor; protease nexin-II (PN-II); APPI Y00264 174 116 220
annexin I (ANX1) X05908 90 72 90
annexin II (ANX2); lipocortin II; calpactin I heavy subunit; chromobindin 8; protein I; placental anticoagulant protein IV (PAPIV) D00017 81 79 96
annexin III (ANX3); lipocortin III; placental anticoagulant protein III) (PAP-III); 35-alpha calcimedin; inositol 1,2-cyclic phosphate 2-phosphohydrolase M20560; J03899 124 96 139
annexin IV (ANX4); lipocortin I; calpactin II; chromobindin 9; phospholipase A2 inhibitory protein X05908; M19383; J03264 113 94 122
annexin IV (ANX4); lipocortin IV; endonexin I; chromobindin 4; protein II; placental anticoagulant protein II (PAP-II); PP4-X; 35-beta calcimedin; carbohydrate-binding protein p33/p41 M19383 135 87 143
annexin V; lipocortin V; endonexin II; calphobindin I (CBP-I) ; placental anticoagulant protein I (PAP-I); PP4; thromboplastin inhibitor; vascular anticoagulant-alpha (VAC-alpha; anchorin CII X12454 126 108 148
annexin VI (ANX6); lipocortin VI; protein III; chromobindin 20; 67-kDa calelectrin; calphobindin-II (CPB-II) D00510 146 93 144
annexin VII (ANX7); synexin J04543 87 59 79
annexin VIII (ANX8) X16662 122 89 124
ANNEXIN XI (CALCYCLIN-ASSOCIATED ANNEXIN 50) (CAP-50) (56 KD AUTOANTIGEN). L19605 131 90 137
ANNEXIN XIII (ANNEXIN, INTESTINE-SPECIFIC)(ISA) Z11502 91 84 124
antileukoproteinase 1 precursor (ALP); HUSI-1; seminal proteinase inhibitor; secretory leukocyte protease inhibitor (SLPI); BLPI; mucus proteinase inhibitor (MPI) X04470 162 57 120
apolipoprotein E precursor (APOE) M12529 229 129 242
apoptosis inhibitor survivin U75285 45 87 44
arylsulfatase B precursor (ASB); N-acetylgalactosamine-4-sulfatase (G4S) J05225 144 107 155
basigin precursor (BSG); leukocyte activation antigen M6; collagenase stimulatory factor; extracellular matrix metalloproteinase inducer (EMMPRIN); 5F7; CD147 antigen P35613 84 129 103
beta 3-endonexin Q13352 72 57 67
beta catenin (CTNNB) P35222 87 112 78
bikunin; hepatocyte growth factor activator inhibitor 2 O00271; O43291 94 109 82
bone morphogenetic protein type IB receptor (BMPR1B) U89326 133 167 168
brain-specific homeobox/POU domain protein 5 (brn-5) Z21966 102 146 123
c-myc purine-binding transcription factor puf; nucleoside diphosphate kinase B (NDP kinase B; NDK B) + nm23-H2S L16785 + M36981 64 122 172
cadherin 11 precursor (CDH11); osteoblast-cadherin (OB-cadherin); OSF4 P55287; Q15065 123 123 70
cadherin 12 (CDH12); brain cadherin precursor (Br-cadherin); neural cadherin 2 (N-cadherin 2) P55289 65 68 50
cadherin 13 (CDH13); truncated cadherin precursor (T-cadherin); heart cadherin (H-cadherin) P55290 81 78 63
cadherin 3 (CDH3); placental cadherin precursor (P-cadherin; CDHP) P22223 167 148 92
cadherin 4 (CDH4); retinal cadherin precursor (R-cadherin; RCAD) P55283 100 96 72
cadherin 5 (CDH5); vascular endothelial cadherin precursor (VE-cadherin); 7B4 antigen; CD144 antigen P33151 160 146 76
cadherin 6 precursor (CDH6); kidney cadherin (K-cadherin) P55285 83 73 57
cadherin 8 (CDH8) P55286 97 79 47
cadherin1 (CDH1); epithelial cadherin precursor (E-cadherin; CDHE); uvomorulin (UVO); CAM 120/80 P12830; Q14216 103 176 71
calcium-binding protein p22; calcium-binding protein CHP U61538 140 83 143
calcium-dependent protease small (regulatory) subunit; calpain; calcium-activated neutral proteinase (CANP) X04106 147 96 153
calcium/calmodulin-dependent 3',5'-cyclic nucleotide phosphodiesterase 1A (CAM-PDE1A); HCAM-1 U40370 139 102 113
calcium/calmodulin-dependent protein kinase I (CAMKI) L41816 55 77 73
calgranulin C (CAGC) CGRP; neutrophil S100 protein; calcium-binding protein in amniotic fluid 1 (CAAF1) X97859 199 116 193

calmodulin M27319 145 90 146
calmodulin J04046 135 96 144
calmodulin 1; delta phosphorylase kinase P02593 83 92 114
calpactin I light chain M81457 120 98 133
calpain 1 large (catalytic) subunit; mu-type calcium-activated neutral proteinase (muCANP) X04366 127 84 132
calpain 2 large (catalytic) subunit; M-type calcium-activated neutral proteinase (CANP) M23254 133 88 143
calpain p94 large (catalytic) subunit; calcium-activated neutral proteinase (CANP); muscle-specific calcium-activated neutral protease 3 large subunit (CAPN3); NCL1 X85030 109 57 75
caltractin 1 (CALT); centrin 2 (CETN2; CEN2) X72964 88 81 114
cannabinoid receptor 1 (CB1; CB-R); CANN6 X81120 140 102 158
cartilage matrix protein (CMP; CRTM); matrilin 1 (MATN1) M55682; J05666 107 143 312
casein kinase I alpha isoform (CKI-alpha); CK1; CSNK1A X80693 131 92 132
casein kinase I delta isoform (CKI-delta); CSNK1D U29171 125 89 138
casein kinase I gamma 2 (CKI-gamma 2) P78368 101 129 83
casein kinase II alpha subunit (CK II); CSNK2A1 J02853 104 73 116
casein kinase II alpha' subunit (CK II); CSNK2A2 M55268 135 89 137
casein kinase II beta subunit (CK II; CSNK2B; CK2N); phosvitin X16937 146 108 159
cathepsin B precursor (CTSB); preprocathepsin B; APP secretase M14221 159 99 159
cathepsin D precursor (CTSD) P07339 128 88 103
CATHEPSIN G PRECURSOR M16117 195 123 199
cathepsin H precursor X07549 134 94 127
cathepsin L precursor; major excreted protein (MEP) X12451 72 106 70
caveolin-1 Q03135 75 86 93
caveolin-2 P51636 80 107 77
CCAAT/enhancer binding protein gamma (C/EBP gamma; CEBPG) U20240 99 73 106
cdc2-related protein kinase PISSLRE L33264 16 116 8
cell cycle progression 2 protein (CPR2) O14710 107 79 96
cell division protein kinase 4; cyclin-dependent kinase 4 (CDK4); PSK-J3 M14505 43 115 20
cell division protein kinase 6 (CDK6); serine/threonine protein kinase PLSTIRE X66365 38 49 60
cell division protein kinase 9 (CDK9); serine/threonine protein kinase PITALRE L25676 77 90 60
chloride channel protein 4 (CLC-4) X77197 99 154 168
clathrin assembly protein lymphoid myeloid leukemia (CALM) U45976 162 147 198
clathrin coat assembly protein AP17; plasma membrane adaptor AP-2 17-kDa protein; HA2 17-kDa subunit; clathrin assembly protein 2 small subunit X97074 98 81 125
clathrin coat assembly protein AP47 homolog 2; Golgi adaptor AP-1 47-kDa protein homolog 2; HA1 47-kDa subunit homolog 2; p47B D38293 138 97 141
clathrin coat assembly protein AP50; plasma membrane adaptor AP-2 50-kDa protein; HA2 50-kDa subunit; clathrin assembly protein 2 small subunit; KIAA0109 D63475 113 91 153
clathrin heavy subunit 1 (CLH-17); KIAA0034 D21260 180 100 176
COFILIN X95404 108 54 106
collagen 10 alpha 1 subunit (COL10A1); collagen alpha 1X subunit precursor X65120 135 108 141
collagen 11 alpha 1 subunit precursor (COL11A1) P12107 82 98 64
collagen 11 alpha 2 subunit (COL11A2) P13942; Q13273; Q07751 69 84 55
collagen 16 alpha 1 subunit precursor (COL16A1) Q07092 99 126 77
collagen 18 alpha 1 subunit (COL18A1) P39060 73 93 58
collagen 4 alpha 2 subunit precursor (COL4A2) P08572 104 118 93
collagen 4 alpha 3 subunit precursor (COL4A3) Q01955 107 115 93
collagen 4 alpha 6 subunit precursor (COL4A6) Q14031 81 101 74
collagen 6 alpha 1 subunit (COL6A1) Q14041 105 121 86
collagen 6 alpha 2 subunit (COL6A2) Q13909; Q13911 98 128 85
collagen 6 alpha 3 subunit (COL6A3) P12111 81 106 87
collagen 8 alpha 1 subunit (COL8A1) P27658 77 103 79
COLLAGEN ALPHA 1 (XV) CHAIN PRECURSOR L25286 94 99 96
connective tissue growth factor precursor (CTGF) P29279 68 100 56
connective tissue growth factor-like protein precursor (CTGFL); WISP2; CT58 AF074604 155 101 158
corneodesmosin precursor (CDSN); S protein L20815 144 95 113
cortactin; amplaxin; ems-1 oncogene M98343 143 107 137
cullin homolog 2 (CUL2) Q13617 84 133 54
cyclin G2 (CCNG2) Q16589 123 128 98
cyclin H (CCNH); MO15-associated protein U11791; U12685 40 104 26
cyclin I Q14094 436 84 87
cyclin-dependent kinase 4 inhibitor D (CDKN2D); p19-INK4D U40343; U20498 70 92 55
CYSTEINE-RICH PROTEIN 2 (CRP2) (ESP1 PROTEIN) D42123 227 229 234
cytohesin-1; Sec7p-like protein Q15795 116 107 98
delta catenin O00379 115 98 60

delta-like protein precursor (DLK) U15979; Z12172 51 103 43
desmin (DES) P17661; Q15787 160 109 104
desmocollin 1A/1B precursor (DSC1); desmosomal glycoprotein 2/3 (DG2/DG3) Q08554 67 83 63
desmocollin 2A/2B precursor (DSC2); desmosomal glycoprotein II/III Q02487 116 92 49
desmocollin 3A/3B precursor (DSC3) + desmocollin 4 (DSC4) Q14574; Q14200 62 77 47
desmoglein 1 precursor (DSG1); desmosomal glycoprotein 1 (DG1) Q02413 69 79 73
desmoglein 2 precursor (DSG2); HDGC Q14126 75 89 47
desmoplakin I & II (DSP; DPI & DPII) P15924 63 65 48
diphosphomevalonate decarboxylase; mevalonate pyrophosphate decarboxylase (MPD) U49260 136 74 132
dual specificity mitogen-activated protein kinase kinase 2 (MAP kinase kinase 2; MAPKK 2); ERK activator kinase 2; MAPK/ERK kinase 2 (MEK2) P36507 88 125 92
dual-specificity mitogen-activated protein kinase kinase 6 (MAP kinase kinase 6; MAPKK 6; MKK6); MAPK/ERK kinase 6; SAPKK3 P52564 69 102 43
dual-specificity protein phosphatase 7; dual-specificity protein phosphatase PYST2 X93921 135 61 168
dual-specificty A-kinase anchoring protein 1 Q92667 63 62 107
DXS6673E protein; X-linked mental retardation candidate gene X95808 144 95 153
dynamin 2 L36983 138 87 148
dystroglycan precursor; dystrophin-associated glycoprotein 1 (DAG1) L19711 141 87 143
E2F dimerization partner 1; DRTF1-polypeptide 1 (DP1) L23959 50 171 27
early growth response protein 1 (hEGR1); transcription factor ETR103; KROX24; zinc finger protein 225; AT225 P18146 153 131 138
elongation factor 2 (EF2) X51466 74 125 103
Endothelial differentiation protein (edg-1) M31210 101 60 100
ENDOTHELIAL PAS DOMAIN PROTEIN 1. EPAS1. U81984 139 109 157
endothelial plasminogen activator inhibitor-1 precursor (PAI1; PLANH1) P05121 94 90 71
endothelial tumor necrosis factor alpha-induced protein 1; B12 protein M80783 103 107 67
endothelin 2 (ET2) P20800 64 67 43
endothelin 3 (EDN3; ET3) J05081 74 80 62
envoplakin (EVPL) Q92817 74 77 73.3
ephrin type-A receptor 1 precursor; tyrosine-protein kinase receptor eph M18391 144 101 138
ephrin type-A receptor 2 precursor; epithelial cell kinase (ECK); tyrosine-protein kinase receptor ECK P29317 101 87 57
ephrin type-A receptor 5 precursor; tyrosine-protein kinase receptor EHK1; EPH homology kinase-1; HEK7 P54756 115 117 72
ephrin type-B receptor 1 precursor; tyrosine-protein kinase receptor EPH-2; NET P54762 147 103 107
ephrin type-B receptor 2 precursor; tyrosine-protein kinase receptor EPH-3; DRT; HEK; ERK L41939 50 69 50
ephrin type-B receptor 4 precursor; tyrosine-protein kinase receptor HTK U07695 37 42 54
ephrin-A5 precursor; EPH-related receptor tyrosine kinase ligand 7 (LERK-7); AL-1 U26403 39 73 25
ephrin-B1 precursor; eph-related receptor tyrosine kinase ligand 2 (LERK-2); ELK ligand precursor (ELK-L) P98172 100 123 106
ephrin-B2 precursor; EPH-related receptor tyrosine kinase ligand 5 (LERK-5); HTK ligand (HTK-L) P52799 86 72 72
ephrin-B3 precursor; eph-related receptor tyrosine kinase ligand 8 (LERK-8); eph-related receptor transmembrane ligand ELK-L3 Q15768 60 75 55
epidermal fatty acid-binding protein 5 (FABP5; EFABP); psoriasis-associated fatty acid-binding protein homolog (PAFABP) M94856 139 112 237
epidermal growth factor receptor (EGFR) P00533; P06268 103 102 70
epidermal growth factor receptor kinase substrate EPS8 Q12929 86 141 71
epidermal growth factor receptor substrate 15 (EPS15); AF-1P protein P42566 97 120 90
erythroblastosis virus oncogene homolog 1 (ETS-1); p54 J04101 152 159 112
ESE1, ERT, JEN, ELF3 (Epithelial-specific transcription factor) U73843 113 138 125
EVI2B protein precursor; ectropic viral integration site 2B protein (EVI2B); EVDB M60830 196 156 205
extracellular signal-regulated kinase 1 (ERK1; p44-ERK1); microtubule-associated protein 2 kinase; insulin-stimulated MAP2 kinase; MAP kinase 1 (MAPK1; p44-MAPK); PRKM3 P27361 95 128 66
extracellular signal-regulated kinase 4 (ERK4); MAP kinase 4 (MAPK4; p63-MAPK); PRKM4 X59727 64 108 53
extracellular signal-regulated kinase 5 (ERK5); BMK1 kinase Q13164; Q16634 94 111 100
extracellular signal-regulated kinase 6 (ERK6); stress-activated protein kinase-3; mitogen-activated protein kinase p38 gamma; (MAP kinase p38 gamma) P53778 180 103 112
ezrin; cytovillin 2; villin 2 (VIL2) P15311; P23714 108 216 77
fibrinogen A alpha polypeptide J00128 152 88 177
fibrinogen B beta polypeptide J00129 124 87 140
fibrinogen G gamma polypeptide X51473; X02415 K02569 103 84 110
fibroblast growth factor 3 (FGF3) ; INT2 proto-oncogene protein precursor; HBGF3 P45452 56 64 52
fibroblast growth factor 5 precursor (FGF5); HBGF5 P12034 68 98 56
fibroblast growth factor 6 precursor (FGF6); HBGF6; HST2 P10767 54 70 62
fibroblast growth factor 8 (FGF8); androgen-induced growth factor precursor (AIGF); HBGF8 P55075 64 73 69
fibroblast growth factor receptor 3 precursor (FGFR3); JTK4 + fibroblast growth factor receptor 2 precursor (FLG2) P22607 + Q99052 93 88 60
fibroblast growth factor receptor 4 (FGFR4) L03840 57 72 52
FIBROBLAST GROWTH FACTOR-10 AB002097 103 79 109
FIBROBLAST GROWTH FACTOR-11 (FGF-11) (FIBROBLAST GROWTH FACTOR HOMOLOGOUS FACTOR 3) (FHF-3) U66199 128 94 137
FIBROBLAST GROWTH FACTOR-13 (FGF-13 ) (FIBROBLAST GROWTH FACTOR HOMOLOGOUS FACTOR 2) (FHF-2) U66198 93 77 111

FIBROBLAST GROWTH FACTOR-14 (FGF-14) (FIBROBLAST GROWTH FACTOR HOMOLOGOUS FACTOR 4) (FHF-4) U66200 95 70 94
fibronectin precursor (FN) P02751; Q14326 316 166 135
fibronectin receptor alpha subunit (FNRA); integrin alpha 5 (ITGA5); VLA5; CD49E antigen P08648 124 101 88
ficolin 1 (FCN1) + FCN2; serum lectin p35 precursor D83920 + D49353 111 122 123
focal adhesion kinase (FADK); proline-rich tyrosine kinase 2 (PYK2) Q05397 84 132 70
focal adhesion kinase 2 (FADK2; FAK2); cell adhesion kinase beta (CAKbeta); proline-rich tyrosine kinase 2 (PYK2) L49207 + U43522 + U33284 99 111 96
FOLLISTATIN 1 AND 2 PRECURSOR (FS) (ACTIVIN-BINDING PROTEIN) M19481 114 72 127
G protein-coupled receptor GPR-NGA U55312 54 106 30
gamma-aminobutyric-acid receptor alpha-4 subunit precursor (GABA(A) receptor) U30461 102 81 132
GAP JUNCTION BETA-2 PROTEIN (CONNEXIN 26) (CX26). M86849 211 125 221
glycerol kinase L13943 194 117 170
granulins precursor (GRN); acrogranin M75161 183 111 202
growth factor receptor-bound protein 2 (GRB2) isoform; GRB3-3; SH2/SH3 adaptor GRB2; ASH protein + epidermal growth factor receptor-bound protein 2 (EGFRBP-GRB2) L29511; M96995 126 250 93
growth inhibitory factor; metallothionein-III (MT-III) P25713 194 298 130
growth-arrest-specific protein (GAS) Q14393 96 64 62
growth/differentiation factor 5 precursor (GDF5); cartilage-derived morphogenetic protein 1 (CDMP1) U13660 100 68 115
GTPase-activating protein (GAP); ras p21 protein activator; p120GAP; RASA M23379 204 191 160
GUANINE NUCLEOTIDE-BINDING PROTEIN G(I), ALPHA-2 SUBUNIT (ADENYLATE CYCLASE-INHIBITING)(GNAI2) X04828 152 79 140
GUANINE NUCLEOTIDE-BINDING PROTEIN G(Q), ALPHA SUBUNIT(GNAQ OR GAQ) U43083 182 92 148
guanine nucleotide-binding protein G(Y) alpha 11 subunit (GNA11; GA11) M69013 244 101 169
GUANINE NUCLEOTIDE-BINDING PROTEIN, ALPHA-15 SUBUNIT (ALPHA-16) M63904 195 113 178
guanylate cyclase soluble alpha 2 subunit X63282; Z50053 205 119 199
high mobility group protein (HMG-I) M23619 308 90 152
high mobility group protein HMG2 P26583 86 86 83
HIGH MOBILITY GROUP PROTEIN HMGI-C X92518 269 75 121
homeobox protein HOX-A4; HOX-1D; HOX-1 4 M74297 122 150 151
HOMEOBOX PROTEIN MOX-1 U10492 185 125 201
host cell factor C1 (HCF); VP16 accessory protein; VCAF; CFF L20010 147 122 170
hypothetical protein KIAA0056 D29954 100 70 134
hypothetical protein KIAA0057 D38491 107 76 168
I-rel (RELB) Q01201 84 98 86
IkappaB epsilon (IKBE) O00221 99 106 125
IkappaB kinase gamma subunit (IKK gamma) AF074382 141 89 143
inhibitor of apoptosis protein 2 (HIAP2; IAP2) + IAP homolog B; TNFR2-TRAF signalling complex protein 2; MIHB U45879 + U37547 74 121 108
insulin-induced protein 1 U96876 75 126 92
integrin alpha 1 (ITGA1); laminin & collagen receptor; VLA1; CD49A antigen P56199 137 111 103
integrin alpha 3 (ITGA3); galactoprotein B3 (GAPB3); VLA3 alpha subunit; CD49C antigen P26006 178 137 115
integrin alpha 4 precursor (ITGA4); VLA4; CD49D antigen P13612 164 142 74
integrin alpha 6 precursor (ITGA6); VLA6; CD49F antigen P23229; Q14646; Q16508; Q08443 112 247 62
integrin alpha 7B precursor (IGA7B) Q13683 89 82 96
integrin alpha 8 (ITGA8) P53708 92 98 71
integrin alpha 9 (ITGA9); integrin alpha-RLC D25303; L24158 77 82 54
integrin alpha E precursor (ITGAE); mucosal lymphocyte-1 antigen; hml-1 antigen; CD103 antigen P38570 112 101 99
integrin beta 1 (ITGB1) Q13089; Q14647 170 106 79
integrin beta 4 (ITGB4); CD104 antigen P16144 405 126 205
integrin beta 5 subunit precursor (ITGB5) P18084 100 106 70
integrin beta 6 precursor (ITGB6) P18564 152 127 73
integrin beta 7 precursor (ITGB7) P26010 125 110 78
integrin beta 8 precursor (ITGB8) P26012 282 302 72
integrin-linked kinase (ILK) U40282 82 110 67
intercellular adhesion molecule 3 precursor (ICAM3); CDW50 antigen; ICAM-R X69711; X69819 119 83 159
INVOLUCRIN M13903 143 70 127
jagged 1 (HJ1) AF028593 65 127 34
jagged2 (JAG2) AF003521 73 133 34
jun-B P17275 349 122 80
junction plakoglobin (JUP); desmoplakin III (DP3) P14923 122 700 88
keratinocyte growth factor (KGF); fibroblast growth factor 7 (FGF-7) P21781 76 71 60
keratinocyte growth factor receptor (KGFR); fibroblast growth factor receptor 2 (FGFR2) + soluble KGFR + FGF-BEK; heparin-binding growth factor receptor K-sam (HGFR K-sam) + secreted FGFR K-sam-III + secreted FGFR K-sam-IV Q14672 + P21802; Q12922 + P18443 + Q14718 + Q14719 93 81 74
laminin 3-kDa receptor P08865 124 142 75
laminin alpha 4 subunit precursor (laminin A4; LAMA4) Q16363; Q15335; Q14735 91 106 80

laminin alpha-1 subunit precursor (LAMA1); laminin A chain X58531 143 106 163
laminin alpha-2 subunit precursor (LAMA2); laminin M chain (LAMM); merosin heavy chain Z26653 144 102 165
laminin alpha-3 subunit precursor (LAMA3); epiligrin 170-kDa subunit (E170) L34155 96 98 111
laminin beta 1 subunit precursor (laminin B1; LAMB1) P07942 92 138 74.4
laminin beta 2 subunit precursor (laminin B2; LAMB2); S-laminin P55268; Q16321 86 119 77
laminin beta-3 subunit precursor (LAMB3); laminin B1K chain; kalinin B1 chain L25541 94 109 103
laminin gamma 1 subunit precursor (LAMC1); laminin B2 subunit (LAMB2) P11047 88 110 68
leukemia-associated gene 1 O43261 344 105 89
LGALS3, MAC2 (Galectin-3, MAC-2 antigen, IGE-binding protein, 35kD Lectin, laminin-binding protein Lectin L-29, GALBP) M35368 154 99 203
LHHCG-luteinizing hormone choriogonadrotropin receptor M63108 101 87 138
LIM DOMAIN PROTEIN CLP-36 U90878 122 100 156
LUCA2; lysosomal hyaluronidase 2 (HYAL2) ; PH-20 homolog U09577 188 110 112
lysosomal protective protein precursor; cathepsin A; carboxypeptidase C; PPGB M22960 82 60 81
major prion protein precursor (PRP); PRP27-30; PRP33-35C; ASCR M13667 106 68 114
MAPK/ERK kinase kinase 3 (MEK kinase 3; MEKK3) Q99759 98 112 69
matrix metalloproteinase 1 (MMP1); interstitial collagenase precursor (CLG); fibroblast collagenase P03956; P08156 76 81 48
matrix metalloproteinase 10 (MMP10); stromelysin 2 precursor (STMY2; SL2); transin 2 P09238 90 139 49
matrix metalloproteinase 11 (MMP11); stromelysin 3 P24347 92 95 47
matrix metalloproteinase 12 (MMP12); metalloelastase P39900 52 59 46
matrix metalloproteinase 13 (MMP13); collagenase 3 precursor P45452 94 88 71
matrix metalloproteinase 14 precursor (MMP14); membrane-type matrix metalloproteinase 1 (MT-MMP1); MMP-X1 P50281; Q92678 72 75 68
matrix metalloproteinase 15 (MMP15); membrane-type matrix metalloproteinase 2 (MT-MMP2) P51511 43 55 47
matrix metalloproteinase 16 precursor (MMP16); membrane-type matrix metalloproteinase 3 (MT-MMP3); MMP-X2 P51512 76 77 71
matrix metalloproteinase 17 (MMP17); membrane-type matrix metalloproteinase 4 (MT-MMP4) Q14850 75 71 70
matrix metalloproteinase 18 (MMP18) + MMP19 Q99580 + Q99542 93 118 46
matrix metalloproteinase 2 (MMP2); 72-kDa gelatinase A; 72-kDa type IV collagenase precursor (CLG4A); TBE-1 P08253 86 100 58
matrix metalloproteinase 3 (MMP3); stromelysin 1 precursor (STMY1; SL1); transin 1 P08254 95 101 65
matrix metalloproteinase 7 (MMP7); matrilysin P09237 84 95 61
matrix metalloproteinase 8 (MMP8); neutrophil collagenase precursor (CLG1); PMNL collagenase (PMNL-CL) P22894 88 104 50
matrix metalloproteinase 9 (MMP9); gelatinase B; 92-kDa type IV collagenase precursor (CLG4B) P14780 94 92 63
melanocyte protein PMEL 17 precursor; melanocyte lineage-specific antigen GP100; melanoma-associated ME20 antigen; 95-kDa melanocyte-specific secreted glycoprotein P40967 196 151 59
melatonin receptor type 1B (MEL-1B-R) U25341 105 102 126
menin O00255 85 87 74
mesothelin precursor; CAK1 antigen U40434 49 46 98
metabotropic glutamate receptor 4 precursor (GRM4; MGLUR4) X80818 107 81 122
metalloprotease/disintegrin/cysteine-rich protein precursor (MDC9) Q13443 104 80 72
metalloproteinase inhibitor 1 precursor (TIMP1); erythroid potentiating activity (EPA); fibroblast collagenase inhibitor P01033; Q14252 84 95 61
metalloproteinase inhibitor 3 precursor; tissue inhibitor of metalloproteinases 3 (TIMP3); mitogen-inducible gene 5 (MIG5) P35625 100 143 78
metastasis-associated protein 1 (MTA1) U35113 42 799 28
migration inhibitory factor-related protein 8 (MRP8); calgranulin A; leukocyte L1 complex light subunit; S100 calcium-binding protein A8; cystic fibrosis antigen (CFAG) X06234 150 98 112
mitochondrial ATP synthase alpha chain precursor; ATP5A1 D14710 156 103 160
moesin-ezrin-radixin-like protein (MERLIN); schwannomin (SCH); neurofibromatosis 2 (NF2) P35240 220 209 59
MT1H (Methallothionein-IH, Metallothinein-0, MT-0) + Metallothionein isoform 1L (MT-1L) + Metallothionein isoform 1R + MT2 (Methallothionein-II) X64177 + X76717 + X97261 + X97260 133 256 258
muscle cadherin precursor (M-cadherin); cadherin 14 or15 (CDH14 or CDH15) P55291 80 97 57
mutL protein homolog; DNA mismatch repair protein MLH1; COCA2 P40692 99 100 80
myelin-oligodendrocyte glycoprotein precursor (MOG) U18840 191 128 205
N-acetylglucosamine-6-sulfatase precursor; glucosamine-6-sulfatase (G6S) Z12173; M23657 147 83 145
N-sam; fibroblast growth factor receptor1 precursor (FGFR1); basic fibroblast growth factor receptor precursor (bFGFR); fms-like tyrosine kinase-2 (FLT2) + heparin-binding growth factor receptor (HBGF-R-alpha-A1) + HBGF-R-alpha-A2 + HBGF-R-alpha-A3 P11362; P17049 + Q02063 + Q02065 88 82 74
NADH-cytochrome B5 reductase Y09501 145 87 151
netrin-2 O00634 104 84 78
neural cell adhesion molecule L1 precursor (N-CAM L1); MIC5 P32004 91 119 57
neural cell adhesion molecule phosphatidylinositol-linked isoform precursor (NCAM120); CD56 antigen P13591; P13592 82 105 62
neural cell adhesion molecule; CALL O00533 104 330 66
neural-cadherin precursor (N-cadherin; NCAD); cadherin 2 (CDH2) P19022; Q14923 68 89 56
NIK serine/threonine protein kinase Y10256 87 115 100
nm23-H4; nucleoside-diphosphate kinase; nucleoside 5'-diphosphate phosphotransferase (NDK) Y07604 103 130 117
notch2 U77493 55 152 29
notch4; hnotch4 O00306 118 213 53
nucleolar phosphoprotein B23; nucleophosmin (NPM); numatrin M23613 125 150 131
oncostatin M-specific receptor beta subunit Q99650 101 90 72
orphan receptor TR4 U10990 194 117 191

p21-activated kinase alpha (PAK-alpha; PAK1) U24152 80 191 113
patched homolog (PTC) Q13463 136 101 51
paxillin P49023 146 109 86
PDGF associated protein U41745 12 22 16
phospholipase C beta 2 (PLC-beta 2; PLCB2); 1-phosphatidylinositol 4,5-bisphosphate phosphodiesterase beta 2 M95678 202 112 198
phospholipid transfer protein precursor (PTLP); lipid transfer protein II L26232 197 125 190
plasma glutathione peroxidase precursor (GPXP; GPX3) D00632; X58295 177 144 202
platelet membrane glycoprotein IIIA precursor (GP3A); integrin beta 3 (ITGB3); CD61 antigen P05106; Q13413; Q16499 103 75 60
platelet-derived growth factor (PDGF) receptor beta-like tumor suppressor (PRLTS) D37965 128 89 126
platelet-derived growth factor B subunit precursor (PDGFB; PDGF2); bacaplermin; c-sis X02811; X02744; M12783; M16288 63 199 60
platelet-derived growth factor receptor alpha subunit (PDGFRA); CD140A antigen P16234 203 103 72
plexin-related protein (PLEXR) Q92472 69 86 63
polycystin precursor; autosomal dominant polycystic kidney disease protein 1 U24497 44 123 70
polypyrimidine tract-binding protein (PTB); heterogeneous nuclear ribonucleoprotein I (HNRNP I); 57-kDa RNA-binding protein PPTB-1 X65372 91 153 129
pre-B-cell leukemia transcription factor-1; homeobox protein pbx1; Homeobox protein prl M86546 128 150 136
procollagen 1 alpha 2 subunit precursor (COL1A2) X55525; J03464 90 118 85
procollagen 2 alpha 1 subunit precursor (COL2A1) P02458 90 94 89
procollagen 3 alpha 1 subunit precursor (COL3A1) P02461 97 110 87
procollagen alpha 2(IV) subunit precursor X05562 149 161 75
prohibitin (PHB) P35232 366 667 74
proliferating cyclic nuclear antigen (PCNA); cyclin M15796; J04718 131 96 114
protein serine/threonine kinase STK1; cell division protein kinase 7 (CDK7); CDK-activating kinase (CAK); 39-kDa protein kinase L20320 77 47 48
protein-tyrosine phosphatase MEG2 (PTPASE-MEG2) M83738 155 96 170
protein-tyrosine phosphatase N precursor (R-PTP-N); PTP IA-2 L18983 93 65 102
protocadherin 42 precursor (PCDH42); cadherin-like protein Q08174 81 64 49
protocadherin 43 precursor (PCDH43); cadherin-like protein Q08192 82.2 61 52
PRSM1 metallopeptidase Q15779 89 79 73
purine-rich single-stranded DNA-binding protein alpha (PURA) M96684 136 102 137
PUTATIVE RECEPTOR PROTEIN (PM1) X51804 149 88 148
PUTATIVE SINGLE ZINC FINGER TRANSCRIPTION FACTOR PROTEIN AF039196 196 107 181
RAR-related orphan receptor C U16997 192 116 200
ras-related C3 botulinum toxin substrate 1; p21-rac1; ras-like protein TC25 M29870; M31467 102 571 45
ras-related C3 botulinum toxin substrate 2; p21-rac2; small G protein M64595; M29871 117 862 60
ras-related protein R-ras2; ras-like protein TC21; teratocarcinoma oncogene M31468 122 77 132
ras-related protein RAB-11B; YPT3 X79780 117 71 130
ras-related protein RAB-1A; YPT1-related protein M28209 129 74 147
ras-related protein RAP-1A; C21KG; KREV-1 protein; GTP-binding protein SMG-p21A; G-22K P10113 252 151 93
receptor activation modifying protein 1 (RAMP1) AJ001014 309 110 185
REGULATOR OF G-PROTEIN SIGNALING 7 (RGS7) (FRAGMENT) U32439 96 54 89
retinoic acid receptor alpha X06614 133 78 124
rho-related GTP-binding protein (RHOG); ARHG X61587 68 105 32
S100 calcium-binding protein A7; psoriasin M86757 136 44 109
SEC13-related protein (SEC13R) L09260 95 115 332
serine kinase SRPK2 U88666 74 188 47
serine/threonin protein phosphatase 2B catalytic subunit gamma; calmodulin-dependent calcineurin A subunit gamma; testic-specific calcineurin catalytic subunit (CAM-PRP catalytic subunit) S46622 63 80 44
serine/threonine protein kinase Q12852 68 136 63
serine/threonine protein kinase Q15524 68 115 52
serine/threonine protein kinase KRS2 Q15802 76 128 58
serine/threonine protein kinase minibrain homolog; HP86; DYRK D86550 64 205 33
serine/threonine protein kinase PK428 U59305 62 98 58
serine/threonine protein kinase PRP4 homolog Q13523 71 127 56
serine/threonine protein kinase SAK Y13115 42 36 42
serine/threonine protein phosphatase 2B catalytic subunit alpha isoform; calmodulin-dependent calcineurin A subunit alpha isoform; CAM-PRP catalytic subunit L14778 133 96 138
serine/threonine protein phosphatase 2B catalytic subunit beta isoform; calmodulin-dependent calcineurin A subunit beta isoform; CAM-PRP catalytic subunit M29551 102 64 113
serine/threonine protein phosphatase 5 (PP5); protein phosphatase T (PPT) X89416 97 80 120
serine/threonine protein phosphatase 6 (PP6) X92972 46 47 45
serine/threonine protein phosphatase PP-X X70218 96 74 126
serine/threonine protein phosphatase PP1-alpha 1 catalytic subunit (PP-1A) M63960 116 132 204
serine/threonine protein phosphatase PP2A-alpha catalytic subunit X12646 128 87 130

serine/threonine-protein kinase KKIALRE X66358 22 107 31
serine/threonine-protein kinase NEK2; NIMA-related protein kinase 2; NIMA-like protein kinase 1; HSPK 21 P51955 69 136 71
serine/threonine-protein kinase NEK3; NIMA-related protein kinase 3; HSPK 36 Z29067 56 88 34
serine/threonine-protein kinase PCTAIRE 1 (PCTK1) Q00536 81 79 58
serine/threonine-protein kinase PCTAIRE 2 (PCTK2) Q00537 80 205 51
serine/threonine-protein kinase PCTAIRE 3 (PCTK3) Q07002 111 218 73
serine/threonine-protein kinase PLK1 (STPK13) U01038 18 27 26
serine/threonine-protein kinase receptor R3 precursor (SKR3); activin receptor-like kinase 1 (ACVRL1; ALK1); TGF-beta superfamily receptor type I (TSR1) L17075 48 73 43
serine/threonine-protein kinase receptor R4 precursor (SKR4); activin receptor-like kinase 5 (ALK5); TGF-beta I receptor (TGFBR1) L11695 110 122 136
sorcin 22-kDa protein (SRI); CP-22 L12387 107 70 113
SOX-9 PROTEIN Z46629 138 84 150
SPAM1, HYAL1, PH20 (Hyaluronidase, Sperm surface protein PH-20, Sperm adhesion molecule 1) S67798 203 110 185
syndecan 1 precursor (SYND1; SDC1); CD138 antigen J05392 220 102 189
T-cell surface glycoprotein CD1D precursor; R3G1 J04142 112 84 125
TAPASIN O15533 72 54 60
tartrate-resistant acid phosphatase type 5 precursor (TR-AP); tartrate-resistant acid ATPase (TRATPase); ACP5 J04430 201 117 195
telomerase reverse transcriptase (hTRT) O14746 101 114 87
tenascin precursor (TN); hexabrachion (HXB); cytotactin; neuronectin; GMEM; miotendinous antigen; glioma-associated extracellular matrix antigen X78565; M55618 55 86 32
tenascin-R Q92752 126 87 84
tetranectin X64559 100 107 117
thy-1 membrane glycoprotein precursor; CDW90 antigen M11749 131 143 177
TIMP-2 (MI) P16035 99 78 80
tissue factor pathway inhibitor 2 D29992 143 91 149
tissue inhibtor of mettaloproteinase 4 (TIMP4) U76456 65 48 50
transcription factor ETR101 M62831 170 105 124
transforming protein rhoB; ARHB; ARH6 X06820 107 684 55
tumor suppressor protein DCC precursor; colorectal cancer suppressor X76132 195 105 125
type I cytoskeletal 10 keratin; cytokeratin 10 (K10) P13645 95 92 89
type I cytoskeletal 12 keratin; cytokeratin 12 (K12) Q99456 141 97 99
type I cytoskeletal 13 keratin; cytokeratin 13 (K13; CK13) + type I cytoskeletal 15 keratin; cytokeratin 15 (K15; CK15) + type I cytoskeletal 17 keratin; cytokeratin 17 (K17; CK17) P13646 102 81 83
type I cytoskeletal 14 keratin; cytokeratin 14 (K14; CK14) P02533 79 100 78
type I cytoskeletal 16 keratin; cytokeratin 16 (K16; CK16); pseudo-keratin K16 type I P30654 60 110 64
type I cytoskeletal 18 keratin; cytokeratin 18 (K18) P05783 67 71 85
type I cytoskeletal 19 keratin; cytokeratin 19 (K19; CK19) P08727 59 69 67
type I cytoskeletal 9 keratin; cytokeratin 9 (K9; CK 9) P35527 81 95 79
type II cytoskeletal 11 keratin (KRT11); cytokeratin 1 (K1; CK1); 67-kDa cytokeratin; hair alpha protein P04264 69 83 73
type II cytoskeletal 2 epidermal keratin (KRT2E); cytokeratin 2E (K2E; CK2E) P35908 88 84 82
type II cytoskeletal 2 oral keratin; cytokeratin 2P (K2P; CK2P) Q01546 78 93 81
type II cytoskeletal 4 keratin (KRT4); cytokeratin 4 (K4; CK4) P19013 96 109 86
type II cytoskeletal 5 keratin (KRT5); cytokeratin 5 (K5; CK5); 58-kDa cytokeratin P13647 105 110 83
type II cytoskeletal 6 keratin: cytokeratin 6A (CK6A); K6A keratin (KRT6A) + CK6B; KRT6B + CK6C; KRT6C + CK6D; KRT6D + CK6E; KRT6E + CK6F; KRT6F P02538 80 77 92
type II cytoskeletal 7 keratin (KRT7); cytokeratin 7 (K7; CK7) P08729 78 89 76
type II cytoskeletal 8 keratin (KRT8); cytokeratin 8 (K8; CK8) P05787; Q14716; Q14717; Q14099 114 108 90
tyrosine-protein kinase receptor tyro3 precursor; rse; sky; dtk D17517 191 102 150
vascular endothelial growth factor B precursor (VEGFB) + VEGF-related factor isoform VRF186 U48801; U43369 47 119 50
vascular endothelial growth factor C precursor (VEGF-C); vascular endothelial growth factor related protein (VRP); FLT4 ligand P49767 76 57 57
vascular endothelial growth factor precursor (VEGF); vascular permeability factor (VPF) M32977; M27281 52 89 45
vascular endothelial growth factor receptor 1 (VEGFR1); tyrosine-protein kinase receptor flt + soluble VEGFR; tyrosine-protein kinase receptor SFLT P17948; P16057 + Q12954 269 151 76
vascular endothelial growth factor receptor 2 precursor (VEGFR2); kinase insert domain receptor (KDR); FLK1 P35968; Q14178 68 75 79
vascular endothelial growth factor receptor 3 precursor (VEGFR3); tyrosine-protein kinase receptor FLT4 P35916 153 116 63
vesicle-membrane fusion protein SNAP23A Y09567 127 120 299
vimentin (VIM) P08670 388 172 141
vitronectin precursor (VTN); serum spreading factor; S-protein P04004; P01141 109 111 91
vitronectin receptor alpha subunit (VNRA); integrin alpha 5 subunit (ITGA5); CD51 antigen M14648; J02826; M18365 147 95 109
voltage-dependent anion-selective channel protein 1 (VDAC1); plasmalemmal porin; outer mitochondrial membrane protein porin; porin 31HL; porin 31HM L06132 136 113 140
voltage-gated potassium channel protein KV12; HUKIV; HBK5; RBK2; NGK1 L02752 100 64 109

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